Oxime Side‐Chain Cross‐Links in an α‐Helical Coiled‐Coil Protein: Structure,Thermodynamics, and Folding‐Templated Synthesis of Bicyclic Species

Covalent side‐chain cross‐links are a versatile method to control peptide folding, particularly when α‐helical secondary structure is the target. Here, we examine the application of oxime bridges, formed by the chemoselective reaction between aminooxy and aldehyde side chains, for the stabilization of a helical peptide involved in a protein–protein complex. A series of sequence variants of the dimeric coiled coil GCN4‐p1 bearing oxime bridges at solvent‐exposed positions were prepared and biophysically characterized. Triggered unmasking of a side‐chain aldehyde in situ and subsequent cyclization proceed rapidly and cleanly at pH 7 in the folded protein complex. Comparison of folding thermodynamics among a series of different oxime bridges show that the cross links are consistently stabilizing to the coiled coil, with the extent of stabilization sensitive to the exact size and structure of the macrocycle. X‐ray crystallographic analysis of a coiled coil with the best cross link in place and a second structure of its linear precursor show how the bridge is accommodated into an α‐helix. Preparation of a bicyclic oligomer by simultaneous formation of two linkages in situ demonstrates the potential use of triggered oxime formation to both trap and stabilize a particular peptide folded conformation in the bound state.     

支化侧链偶氮无规共聚物中空和类囊泡聚集体研究

研究了支化侧链型偶氮无规共聚物(PMAPB6P-AA)在THF/H2O混合溶液中的自组装行为.研究发现,通过缓慢增加体系的水含量,可以制备出具有中空结构的非球形聚集体.调节聚合物的初始浓度,可以得到不同粒径的聚集体.聚集体中偶氮生色团的光致异构化速率与异构化程度随聚合物初始浓度的增大而减小.在此基础上,采用更加缓慢的增加水含量的方法,使聚合物分子进行充分的疏水聚集与H-聚集,制备出类囊泡状聚集体.在紫外光照射条件下,观察到类囊泡聚集体发生了光致解聚集.     

Synthesis of poly(isopropenylphenoxy propylene carbonate) and its facile side‐chain functionalization into hydroxy‐polyurethanes

4‐Isopropenyl phenol ( 4‐IPP ) is a versatile dual functional intermediate that can be prepared readily from bisphenol‐A ( BPA ). Through etherification with epichlorohydrin to the phenolic group of 4‐IPP , it can be converted into 4‐isopropenyl phenyl glycidyl ether ( IPGE ). On further reaction with carbon dioxide in the presence of tetra‐n‐butyl ammonium bromide ( TBAB ) as the catalyst, IPGE was transformed into 4‐isopropenylphenoxy propylene carbonate ( IPPC ) in 90% yield. Cationic polymerization of IPPC with strong acid such as trifluoromethanesulfonic acid or boron trifluoride diethyl etherate as the catalyst at ?40 °C gave a linear poly(isopropenylphenoxy propylene carbonate), poly( IPPC ), with multicyclic carbonate groups substituted uniformly at the side‐chains of the polymer. The cyclic carbonate groups of poly( IPPC ) were further reacted with different aliphatic amines and diamines resulting in formation of polymers with hydroxy‐polyurethane on side‐chains. Syntheses, characterizations of poly( IPPC ) and its conversion into hydroxy‐polyurethane crosslinked polymers were presented. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 802–808     

The parameterization and validation of generalized born models using the pairwise descreening approximation

Generalized Born Surface Area (GBSA) models for water using the Pairwise Descreening Approximation (PDA) have been parameterized by two different methods. The first method, similar to that used in previously reported parameterizations, optimizes all parameters against the experimental free energies of hydration of organic molecules. The second method optimizes the PDA parameters to compensate only for systematic errors of the PDA. The best models are compared to Poisson-Boltzmann calculations and applied to the computation of potentials of mean force (PMFs) for the association of various molecules. PMFs present a more rigorous test of the ability of a solvation model to correctly reproduce the screening of intermolecular interactions by the solvent, than its accuracy at predicting free energies of hydration of small molecules. Models derived with the first method are sometimes shown to fail to compute accurate potentials of mean force because of large errors in the computation of Born radii, while no such difficulties are observed with the second method. Furthermore, accurate computation of the Born radii appears to be more important than good agreement with experimental free energies of solvation. We discuss the source of errors in the potentials of mean force and suggest means to reduce them. Our findings suggest that Generalized Born models that use the Pairwise Descreening Approximation and that are derived solely by unconstrained optimization of parameters against free energies of hydration should be applied to the modeling of intermolecular interactions with caution.     

Synthesis of D-Glucose-based Azacrown Ethers with Phosphinoxidoalkyl Side Chains and Their Application to an Enantioselective Reaction

Five chiral -D-glucose-based monoaza-15-crown-5 ethers with phosphinoxidoalkyl side chains of one to five carbon atoms (5a–e)have been synthesised. The cation binding ability of the new lariat ethers was evaluated bythe picrate extraction method. The substituents at the nitrogen atom were not a major influenceon the cation extraction ability of the azacrown ether; the compounds showed, however, a significant asymmetric induction as phase transfer catalysts in the Michael addition of2-nitropropane to chalcone (95% ee).     

Donor–acceptor (donor) polymers with differently conjugated side groups at the acceptor units for photovoltaics

Four new donor–acceptor (donor) [D–A(D)], PBDT‐PTQ, PBDT‐PTTQ, PBDT‐TQ, and PBDT‐TTQ, bearing the same backbone of alternative benzodithiophene (BDT) and quinoxaline units but with phenylene thienyl, phenylene di‐thienyl, thienyl and di‐thienyl groups (other donors), respectively, at the acceptor quinoxaline units, were designed and synthesized to investigate the impacts of the conjugated side chains at the acceptor units on the photovoltaic properties of polymers. The power conversion efficiencies (PCEs) of the polymer solar cells (PSCs) based on PBDT‐TQ:[6,6]‐phenyl‐C‐70‐butyric acid methyl ester (PC70BM) and PBDT‐PTQ:PC70BM reach to 4.39 and 3.58%, respectively, which are 43 and 17% higher, respectively, than that of a reported alkylphenyl substituted polymer with the same main chain. However, the PCEs based on PBDT‐TTQ and PBDT‐PTTQ, in which an additional thiophene is added at a side chain of PBDT‐TQ and PBDT‐PTQ, respectively, decline. The mechanism how the conjugated side chains affect the performance of the PSCs is also discussed. © 2013 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Nonlinear optical side‐chain polymers post‐functionalized with high‐β chromophores exhibiting large electro‐optic property

Electro‐optic side‐chain polymers have been synthesized by the post‐functionalization of methacrylate isocyanate polymers with novel phenyl vinylene thiophene vinylene bridge (FTC) nonlinear optical chromophores. For this application, FTC‐based chromophores were modified in their electronic donor structure, exhibiting much larger molecular hyperpolarizabilities compared with the benchmark FTC. Of these new chromophores, absorption spectra, hyper‐Rayleigh scattering experiment, and thermal analysis were carried out to confirm availability as effective nonlinear optical units for electro‐optic side‐chain polymers. The electro‐optic coefficients (r₃₃) of obtained polymers were investigated in the process of in situ poling by monitoring the temperature, current flow, poling field, and electro‐optic signal. Compared with the nonsubstituted analogue, benxyloxy modified FTC chromophore significantly achieved higher nonlinear optical property, exhibiting molecular hyperpolarizability at 1.9 μm of 4600 × 10^?30 esu and an r₃₃ value of 150 pm/V at the wavelength of 1.31 μm. Synthesized electro‐optic polymers showed high glass transition temperature (T_g), so that the temporal stability examination exhibited >78% of the electro‐optic intensity remaining at 85 °C over 500 h. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

Polyrotaxanes by free‐radical polymerization of acrylate and methacrylate monomers in the presence of a crown ether

Poly[(methyl acrylate)‐rotaxa‐(30‐crown‐10)] ( 5 ) and poly[(methyl methacrylate)‐rotaxa‐(30‐crown‐10)] ( 6 ) were synthesized by azobisisobutyronitrile‐initiated free‐radical bulk polymerizations of the respective monomers in the presence of 30‐crown‐10 ( 1 ; equimolar; 5 times the monomer mass). For 5 , 3.8 mass % (0.81 mol % with respect to the monomer) of the crown was incorporated versus 1.7 mass % (0.39 mol % with respect to the monomer) for 6 . Control reactions with 18‐crown‐6, which is to small to be threaded, showed that chain transfer to the crown ethers was detectable only for the acrylate but was relatively negligible and spectroscopically distinct. The threading yields were much higher with these systems than with polystyrene, most likely because of the greater compatibility of the crown ether with these polar monomers and polymers and the consequent ability to carry out the polymerizations homogeneously in the absence of added solvent; however, the threading process was still essentially statistical. Therefore, the polymerization of methacrylate monomers 8a – 8c based on tetraarylmethane moieties connected via diethyleneoxy or triethyleneoxy spacers was examined in the presence of 1 in the belief that the supramolecular semirotaxane monomer 9 formed statistically in situ could be captured more efficiently and produce higher threading yields, presumably of side‐chain polyrotaxanes, than the simple (meth)acrylate monomers. Azobisisobutyronitrile‐initiated polymerizations either neat or in toluene produced polyrotaxanes 10 with up to about 1.6 mass % and 2 mol % threaded crown ether, presumably trapped on the pendant stoppered side chains. Although primarily statistical in nature, the latter rotaxane syntheses afforded on a molar basis 3–7 times more efficient incorporation of 1 than styrene (0.33 mol %), methyl acrylate (0.81 mol %), or methyl methacrylate (0.39 mol %) monomers for the preparation of main‐chain polypseudorotaxanes and indeed even surpassed the 60‐crown‐20/polyacrylonitrile system (1.5 mol %). This was presumed to be due to the fact that the loss of the crown ether, once it was threaded onto the monomer to form 9 and the latter was polymerized, was either retarded (by the tetraphenylmethyl stopper in 10a ) or prevented completely [by tris(p‐t‐butylphenyl)phenylmethyl stoppers in 10b and 10c ]. © 2001 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 1978–1993, 2001     

Side Reactions in the Liquid-Phase Cyclohexanone Ammoximation

Influence of metal ions on hydrogen peroxide decomposition on the liquid-phase ammoximation of cyclohexanone was studied in homogeneous and heterogeneous (over titanium silicalite) conditions. The latter reaction is accompanied by side reactions, which deactivate the catalyst. Deactivation behavior is discussed.     

Unexpected reactions associated with the xanthate‐mediated polymerization of N‐vinylpyrrolidone

The monomer N‐vinylpyrrolidone (NVP) undergoes side reactions in the presence of R group functional xanthates and impurities. The fate of the monomer NVP and a selection of six O‐ethyl xanthates during xanthate‐mediated polymerization were studied via NMR spectroscopy. A high number of by‐products were identified. Significant side reactions affecting NVP include the formation of an unsaturated dimer and hydration products in bulk or in solution in C₆D₆. In addition, the xanthate adjacent to a NVP unit was found to undergo elimination at moderate temperature (60–70 °C), resulting in unsaturated species and the formation of new xanthate species. The presence of the chlorinated compound α‐chlorophenyl acetic acid, ethyl ester, a precursor in the synthesis of the xanthate S‐(2‐ethyl phenylacetate) O‐ethyl xanthate, resulted in a dramatic increase in the rate of side reactions such as unsaturated dimer formation and a high ratio of unsaturated chain ends. The conditions for the occurrence of such side reactions are discussed in this article, with relevance to increasing the control over the polymerization kinetics, endgroup functionality, and control over the molar mass distribution. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 6575–6593, 2008